RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g43160.1 View Network Show in Genome Browser |
| Other Names | Os08g0544800 |
| Description | TCP family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27296218-27298176 Nucleotide Length: 1122 |
| Protein-coding | LOC_Os08g43160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g05720 LOC_Os05g43760 LOC_Os01g11550 LOC_Os02g35770 LOC_Os01g45570 LOC_Os05g50130 LOC_Os05g50270 LOC_Os05g05860 LOC_Os01g45730 LOC_Os04g48350 LOC_Os02g45450 More.. |
| Downstream Genes | LOC_Os09g28630 LOC_Os09g28620 LOC_Os09g28650 LOC_Os09g28640 LOC_Os09g28660 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g43160.1 |
| Rice Genome Annotation | LOC_Os08g43160.1 |
| Ricechip | LOC_Os08g43160.1 |
| KEGG | osa:4346214 dosa:Os08t0544800-01 |
| Entrez-Gene | 4346214 |