RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g43560.1 View Network Show in Genome Browser |
| Other Names | Os08g0549100 |
| Description | OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27555026-27559370 Nucleotide Length: 876 |
| Protein-coding | LOC_Os08g43560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g08840 LOC_Os03g58630 LOC_Os08g42690 LOC_Os03g63480 LOC_Os05g34770 LOC_Os07g44430 LOC_Os01g48420 LOC_Os04g37580 LOC_Os04g37570 LOC_Os01g55740 LOC_Os06g07090 More.. |
| Downstream Genes | LOC_Os09g33810 LOC_Os11g42160 LOC_Os08g44770 LOC_Os09g35790 LOC_Os10g41150 LOC_Os11g18170 LOC_Os10g05800 LOC_Os12g03720 LOC_Os11g03900 LOC_Os12g44150 LOC_Os09g10720 More.. |
| Reference | |
|---|---|
| PubMed | 17916638 22196946 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g43560.1 |
| Rice Genome Annotation | LOC_Os08g43560.1 |
| Ricechip | LOC_Os08g43560.1 |
| KEGG | osa:4346247 dosa:Os08t0549100-01 |
| Entrez-Gene | 4346247 |