RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g44000.1 View Network Show in Genome Browser |
| Other Names | Os08g0553800 |
| Description | uncharacterized protein ycf39, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27695184-27700281 Nucleotide Length: 1161 |
| Protein-coding | LOC_Os08g44000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g27770 LOC_Os02g47610 LOC_Os02g13970 LOC_Os02g18450 LOC_Os03g14040 LOC_Os03g08570 |
| Downstream Genes | LOC_Os09g34140 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2866 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00300 rn01100 rn01110 rn01120 rn00052 rn00520 |
| Metacyc Pathways | DAPLYSINESYN-PWY PWY-5097 PWY-2941 UDPNACETYLGALSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g44000.1 |
| Rice Genome Annotation | LOC_Os08g44000.1 |
| Ricechip | LOC_Os08g44000.1 |
| KEGG | osa:4346272 dosa:Os08t0553800-01 |
| Entrez-Gene | 4346272 |