RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os08g44240.1 View Network Show in Genome Browser
Other Names	Os08g0556550,Os08g0556500
Description	AAA-type ATPase family protein, putative, expressed
Gene Attributes	Chromosome: Chr8 CDS Coordinates (5'-3'): 27849043-27856246 Nucleotide Length: 3279
Protein-coding	LOC_Os08g44240

Gene Ontology Classification
GO	Name	Type	Code
GO:0009056	catabolic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005777	peroxisome	Cellular Component	IEA
GO:0005777	peroxisome	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os04g52690 LOC_Os07g41800 LOC_Os08g39080 LOC_Os03g57210 LOC_Os02g42314 LOC_Os08g41730 LOC_Os05g19480 LOC_Os02g14790 LOC_Os06g51150 LOC_Os07g05810 LOC_Os05g44310 More..
Downstream Genes	LOC_Os09g32800 LOC_Os12g07720 LOC_Os10g30580 LOC_Os10g31950 LOC_Os12g04990 LOC_Os11g04980 LOC_Os10g32960 LOC_Os12g13930 LOC_Os11g36390 LOC_Os12g07110 LOC_Os11g33240 More..

miRNA Regulations
miRNAs	osa-miR5519

Database Links
Gramene	LOC_Os08g44240.1
Rice Genome Annotation	LOC_Os08g44240.1
Ricechip	LOC_Os08g44240.1
KEGG	osa:4346288 dosa:Os08t0556550-01 dosa:Os08t0556500-00