RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g45000.1 View Network Show in Genome Browser |
| Other Names | Os08g0564000 |
| Description | inorganic phosphate transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 28244202-28246028 Nucleotide Length: 1605 |
| Protein-coding | LOC_Os08g45000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g50660 LOC_Os05g48422 LOC_Os05g49230 LOC_Os02g38020 LOC_Os01g43020 LOC_Os05g01310 LOC_Os06g09570 LOC_Os08g09350 LOC_Os07g01920 LOC_Os01g11300 LOC_Os08g39370 More.. |
| Downstream Genes | LOC_Os12g36950 LOC_Os09g31130 LOC_Os10g26660 LOC_Os10g25110 LOC_Os09g17840 LOC_Os09g17830 LOC_Os12g37840 LOC_Os09g37860 LOC_Os10g42430 LOC_Os11g14220 LOC_Os09g20090 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399d osa-miR399i osa-miR399j osa-miR399a osa-miR399b osa-miR399c |
| Reference | |
|---|---|
| PubMed | 12271140 18980647 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g45000.1 |
| Rice Genome Annotation | LOC_Os08g45000.1 |
| Ricechip | LOC_Os08g45000.1 |
| KEGG | osa:4346342 dosa:Os08t0564000-01 |
| Entrez-Gene | 4346342 |