RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g01620.1 View Network Show in Genome Browser |
| Other Names | Os09g0103500 |
| Description | RNA pseudouridine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 437172-443033 Nucleotide Length: 1398 |
| Protein-coding | LOC_Os09g01620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g23430 LOC_Os07g44940 LOC_Os03g05806 LOC_Os03g22950 LOC_Os05g31290 LOC_Os08g43580 LOC_Os07g12150 LOC_Os03g18590 LOC_Os04g30760 LOC_Os03g63930 LOC_Os03g39860 More.. |
| Downstream Genes | LOC_Os09g36860 LOC_Os11g31900 LOC_Os12g34890 LOC_Os11g34850 LOC_Os11g34770 LOC_Os12g13930 LOC_Os11g37900 LOC_Os10g09860 LOC_Os12g02730 LOC_Os10g42250 LOC_Os10g28060 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g01620.1 |
| Rice Genome Annotation | LOC_Os09g01620.1 |
| Ricechip | LOC_Os09g01620.1 |
| KEGG | osa:4346373 dosa:Os09t0103500-01 |
| Entrez-Gene | 4346373 |