RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g01680.1 View Network Show in Genome Browser |
| Other Names | Os09g0104200 |
| Description | DNA repair protein RAD51 homolog 4, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 485012-490816 Nucleotide Length: 852 |
| Protein-coding | LOC_Os09g01680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35450 LOC_Os01g39630 LOC_Os05g03050 LOC_Os03g43850 LOC_Os01g71690 LOC_Os02g34750 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os05g42060 LOC_Os04g44354 More.. |
| Downstream Genes | LOC_Os11g16580 LOC_Os12g10850 LOC_Os10g18530 LOC_Os09g34230 LOC_Os10g18480 LOC_Os10g18510 LOC_Os09g34250 LOC_Os09g34270 LOC_Os09g34214 LOC_Os10g17489 LOC_Os09g30980 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g01680.1 |
| Rice Genome Annotation | LOC_Os09g01680.1 |
| Ricechip | LOC_Os09g01680.1 |
| KEGG | osa:4346376 dosa:Os09t0104200-01 |
| Entrez-Gene | 4346376 |