RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g02540.1 View Network Show in Genome Browser |
| Other Names | |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 1059839-1060630 Nucleotide Length: 678 |
| Protein-coding | LOC_Os09g02540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g45710 LOC_Os02g07260 LOC_Os03g03720 LOC_Os05g41640 LOC_Os01g58610 LOC_Os04g38600 |
| Downstream Genes | LOC_Os11g07020 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00680 rn00710 rn01100 rn01120 |
| Metacyc Pathways | ANAEROFRUCAT-PWY P185-PWY GLUCONEO-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g02540.1 |
| Rice Genome Annotation | LOC_Os09g02540.1 |
| Ricechip | LOC_Os09g02540.1 |