RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g04110.1 View Network Show in Genome Browser |
| Other Names | Os09g0127800 |
| Description | coatomer alpha subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 2126232-2132704 Nucleotide Length: 3657 |
| Protein-coding | LOC_Os09g04110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g11830 LOC_Os05g24601 LOC_Os06g05180 LOC_Os01g61710 LOC_Os08g28080 LOC_Os07g10150 LOC_Os01g17430 LOC_Os05g38610 LOC_Os03g12590 LOC_Os02g21250 LOC_Os02g11840 More.. |
| Downstream Genes | LOC_Os11g07280 LOC_Os12g30540 LOC_Os11g20384 LOC_Os11g36470 LOC_Os10g42420 LOC_Os10g17280 LOC_Os09g30418 LOC_Os09g30412 LOC_Os11g16480 LOC_Os12g03340 LOC_Os11g14220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g04110.1 |
| Rice Genome Annotation | LOC_Os09g04110.1 |
| Ricechip | LOC_Os09g04110.1 |
| KEGG | osa:4346440 dosa:Os09t0127800-01 |
| Entrez-Gene | 4346440 |