RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g04440.1 View Network Show in Genome Browser |
| Other Names | Os09g0130800 |
| Description | DNA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 2354824-2362285 Nucleotide Length: 2946 |
| Protein-coding | LOC_Os09g04440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61760 LOC_Os03g41080 LOC_Os01g52010 LOC_Os04g45200 LOC_Os03g53300 LOC_Os06g05890 LOC_Os02g19150 LOC_Os03g31490 LOC_Os01g51980 LOC_Os04g37619 LOC_Os03g63660 More.. |
| Downstream Genes | LOC_Os09g17620 LOC_Os12g32970 LOC_Os09g39560 LOC_Os10g25030 LOC_Os12g02350 LOC_Os09g35730 LOC_Os10g35180 LOC_Os12g19530 LOC_Os10g02930 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g04440.1 |
| Rice Genome Annotation | LOC_Os09g04440.1 |
| Ricechip | LOC_Os09g04440.1 |
| KEGG | osa:4346450 dosa:Os09t0130800-02 |
| Entrez-Gene | 4346450 |