RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g04790.1 View Network Show in Genome Browser |
| Other Names | Os09g0133600 |
| Description | PAP fibrillin family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 2548874-2552855 Nucleotide Length: 960 |
| Protein-coding | LOC_Os09g04790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51792 LOC_Os04g46610 LOC_Os08g45210 LOC_Os03g22830 LOC_Os02g57560 LOC_Os05g41440 LOC_Os03g24380 |
| Downstream Genes | LOC_Os11g38260 LOC_Os09g36200 LOC_Os10g21000 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2873b |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g04790.1 |
| Rice Genome Annotation | LOC_Os09g04790.1 |
| Ricechip | LOC_Os09g04790.1 |
| KEGG | osa:4346460 dosa:Os09t0133600-01 |
| Entrez-Gene | 4346460 |