RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g04880.1 View Network Show in Genome Browser |
| Other Names | Os09g0134400 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 2597219-2600726 Nucleotide Length: 783 |
| Protein-coding | LOC_Os09g04880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g39670 LOC_Os05g38160 LOC_Os03g58410 LOC_Os01g10010 LOC_Os01g62890 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5498 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00592 rn01100 rn00564 |
| Metacyc Pathways | PWY-735 LIPASYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g04880.1 |
| Rice Genome Annotation | LOC_Os09g04880.1 |
| Ricechip | LOC_Os09g04880.1 |
| KEGG | osa:4346463 dosa:Os09t0134400-01 |
| Entrez-Gene | 4346463 |