RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os09g07120.1 View Network Show in Genome Browser |
Other Names | Os09g0246200 |
Description | DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed |
Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 3456030-3467826 Nucleotide Length: 3054 |
Protein-coding | LOC_Os09g07120 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0003677 | DNA binding | Molecular Function | IEA | |
GO:0016740 | transferase activity | Molecular Function | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0005739 | mitochondrion | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0009579 | thylakoid | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os03g61560 LOC_Os01g47256 LOC_Os03g50120 LOC_Os04g42490 LOC_Os04g53210 LOC_Os03g38020 LOC_Os07g07010 LOC_Os03g11720 LOC_Os02g46320 LOC_Os03g45920 LOC_Os07g05820 More.. |
Downstream Genes | LOC_Os12g06910 LOC_Os10g25674 LOC_Os09g20090 LOC_Os09g30418 LOC_Os09g30412 LOC_Os11g06390 LOC_Os10g36650 LOC_Os09g32952 LOC_Os12g29660 LOC_Os12g04010 LOC_Os11g04200 More.. |
miRNA Regulations | |
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miRNAs | osa-miR1858a osa-miR1858b |
Pathways | |
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KEGG Pathways | rn00230 rn01100 rn00240 |
Reference | |
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PubMed | 15509842 |
Database Links | |
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Gramene | LOC_Os09g07120.1 |
Rice Genome Annotation | LOC_Os09g07120.1 |
Ricechip | LOC_Os09g07120.1 |
KEGG | osa:4346491 dosa:Os09t0246200-01 |
Entrez-Gene | 4346491 |