RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g08430.1 View Network Show in Genome Browser |
| Other Names | Os09g0258600 |
| Description | ribosomal protein L22, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 4390880-4393872 Nucleotide Length: 516 |
| Protein-coding | LOC_Os09g08430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14059 LOC_Os06g35730 LOC_Os05g11710 LOC_Os01g10820 LOC_Os05g30530 LOC_Os04g42380 LOC_Os03g21940 LOC_Os01g54870 LOC_Os03g04750 LOC_Os03g59310 LOC_Os07g08660 More.. |
| Downstream Genes | LOC_Os12g38000 LOC_Os11g29190 LOC_Os10g32820 LOC_Os12g03090 LOC_Os11g03400 LOC_Os09g32976 LOC_Os09g39500 LOC_Os09g31180 LOC_Os12g05430 LOC_Os11g06750 LOC_Os12g07010 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g08430.1 |
| Rice Genome Annotation | LOC_Os09g08430.1 |
| Ricechip | LOC_Os09g08430.1 |
| KEGG | osa:4346540 dosa:Os09t0258600-01 |
| Entrez-Gene | 4346540 |