RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g08890.1 View Network Show in Genome Browser |
| Other Names | |
| Description | mitochondrial 60S ribosomal protein L5, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 4704612-4707752 Nucleotide Length: 966 |
| Protein-coding | LOC_Os09g08890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g46930 LOC_Os01g15290 LOC_Os03g48840 LOC_Os08g27090 LOC_Os04g59494 LOC_Os02g46440 LOC_Os02g01230 LOC_Os03g54040 LOC_Os03g24020 LOC_Os05g33020 LOC_Os08g15460 More.. |
| Downstream Genes | LOC_Os12g42180 LOC_Os12g04160 LOC_Os11g04370 LOC_Os09g19954 LOC_Os09g17840 LOC_Os09g17830 LOC_Os10g41050 LOC_Os10g08930 LOC_Os11g37510 LOC_Os12g30490 LOC_Os12g38000 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2871a-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g08890.1 |
| Rice Genome Annotation | LOC_Os09g08890.1 |
| Ricechip | LOC_Os09g08890.1 |