RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g10230.1 View Network Show in Genome Browser |
| Other Names | Os09g0274400 |
| Description | Skp1 family, dimerisation domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 5574829-5575332 Nucleotide Length: 504 |
| Protein-coding | LOC_Os09g10230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27160 LOC_Os01g43540 LOC_Os02g47870 LOC_Os01g27150 LOC_Os05g05700 LOC_Os02g15220 LOC_Os04g56070 LOC_Os05g13300 LOC_Os01g32930 LOC_Os01g01700 LOC_Os01g11580 More.. |
| Downstream Genes | LOC_Os11g48030 LOC_Os11g42160 LOC_Os10g05800 LOC_Os11g01780 LOC_Os12g36670 LOC_Os12g01760 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g10230.1 |
| Rice Genome Annotation | LOC_Os09g10230.1 |
| Ricechip | LOC_Os09g10230.1 |