RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g12540.1 View Network Show in Genome Browser |
| Other Names | Os09g0296800 |
| Description | chlorophyll A-B binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 7185218-7188146 Nucleotide Length: 966 |
| Protein-coding | LOC_Os09g12540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g04770 LOC_Os06g49530 LOC_Os04g10350 LOC_Os03g53300 LOC_Os03g10860 LOC_Os01g52010 LOC_Os02g53860 LOC_Os03g02640 LOC_Os03g12030 LOC_Os03g08570 LOC_Os02g19150 More.. |
| Downstream Genes | LOC_Os12g32250 LOC_Os10g25030 LOC_Os09g39560 LOC_Os12g32970 LOC_Os12g19530 LOC_Os12g02120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g12540.1 |
| Rice Genome Annotation | LOC_Os09g12540.1 |
| Ricechip | LOC_Os09g12540.1 |
| KEGG | osa:4346649 dosa:Os09t0296800-01 |
| Entrez-Gene | 4346649 |