RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g12560.1 View Network Show in Genome Browser |
| Other Names | Os09g0297000 |
| Description | ferrochelatase-2, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 7198633-7204750 Nucleotide Length: 1449 |
| Protein-coding | LOC_Os09g12560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g53450 LOC_Os08g15600 LOC_Os02g45920 LOC_Os06g03770 LOC_Os08g06200 LOC_Os01g55110 LOC_Os08g30790 LOC_Os06g04460 LOC_Os05g51420 LOC_Os05g26660 LOC_Os03g57310 More.. |
| Downstream Genes | LOC_Os10g41150 LOC_Os09g37080 LOC_Os10g28160 LOC_Os10g28170 LOC_Os10g32700 LOC_Os09g19710 LOC_Os11g20790 LOC_Os12g13380 LOC_Os12g01060 LOC_Os11g01074 LOC_Os09g34860 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | HEMEBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g12560.1 |
| Rice Genome Annotation | LOC_Os09g12560.1 |
| Ricechip | LOC_Os09g12560.1 |
| KEGG | osa:4346651 dosa:Os09t0297000-01 |
| Entrez-Gene | 4346651 |