RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os09g12660.1 View Network Show in Genome Browser
Other Names	Os09g0298200
Description	glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Gene Attributes	Chromosome: Chr9 CDS Coordinates (5'-3'): 7245359-7249816 Nucleotide Length: 1503
Protein-coding	LOC_Os09g12660

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0005975	carbohydrate metabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005576	extracellular region	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os08g09230 LOC_Os01g52250 LOC_Os04g53310 LOC_Os02g51070 LOC_Os05g45720 LOC_Os06g06560 LOC_Os06g04200 LOC_Os06g12450 LOC_Os07g22930 LOC_Os02g56320 LOC_Os06g51084 More..
Downstream Genes	LOC_Os10g30156 LOC_Os09g29404

miRNA Regulations
miRNAs	osa-miR5529

Pathways
KEGG Pathways	rn00500 rn00520 rn01100 rn01110
Metacyc Pathways	PWY-622 GLYCOGENSYNTH-PWY

Reference
PubMed	15821022

Database Links
Gramene	LOC_Os09g12660.1
Rice Genome Annotation	LOC_Os09g12660.1
Ricechip	LOC_Os09g12660.1
KEGG	osa:4346656 dosa:Os09t0298200-01
Entrez-Gene	4346656