RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g13610.3 View Network Show in Genome Browser |
| Other Names | Os09g0306700 |
| Description | PFT1, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 7914276-7923657 Nucleotide Length: 1800 |
| Protein-coding | LOC_Os09g13610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g07730 LOC_Os01g07520 LOC_Os06g11370 LOC_Os01g51020 LOC_Os01g51154 LOC_Os02g57540 LOC_Os05g46430 LOC_Os06g35530 LOC_Os08g04280 |
| Downstream Genes | LOC_Os10g42950 LOC_Os12g36760 LOC_Os09g34040 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.2 osa-miR444c.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g13610.3 |
| Rice Genome Annotation | LOC_Os09g13610.3 |
| Ricechip | LOC_Os09g13610.3 |
| KEGG | osa:4346673 dosa:Os09t0306700-01 |
| Entrez-Gene | 4346673 |