RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os09g14610.1 View Network Show in Genome Browser
Other Names	Os09g0315100,Os09g0315050
Description	DCL2, putative, expressed
Gene Attributes	Chromosome: Chr9 CDS Coordinates (5'-3'): 8646683-8653977 Nucleotide Length: 2013
Protein-coding	LOC_Os09g14610

Gene Ontology Classification
GO	Name	Type	Code
GO:0009056	catabolic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0040029	regulation of gene expression, epigenetic	Biological Process	IEA
GO:0040029	regulation of gene expression, epigenetic	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0004518	nuclease activity	Molecular Function	IEA
GO:0004518	nuclease activity	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0005622	intracellular	Cellular Component	IEA
GO:0005622	intracellular	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os08g10649 LOC_Os03g55640 LOC_Os05g49220 LOC_Os02g16709 LOC_Os02g04050 LOC_Os01g67740 LOC_Os02g04080 LOC_Os02g04040 LOC_Os05g41750 LOC_Os02g04060 LOC_Os02g33850 More..
Downstream Genes	LOC_Os09g28000 LOC_Os11g40500 LOC_Os12g44390 LOC_Os11g05556 LOC_Os11g05552 LOC_Os09g36860 LOC_Os12g34890 LOC_Os11g31900 LOC_Os09g32274 LOC_Os10g39950 LOC_Os11g14170 More..

Reference
PubMed	18826656

Database Links
Gramene	LOC_Os09g14610.1
Rice Genome Annotation	LOC_Os09g14610.1
Ricechip	LOC_Os09g14610.1
KEGG	osa:4346696 dosa:Os09t0315100-01 dosa:Os09t0315050-00
Entrez-Gene	4346696