RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g15420.1 View Network Show in Genome Browser |
| Other Names | Os09g0323000 |
| Description | NAD dependent epimerase/dehydratase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 9437667-9442553 Nucleotide Length: 1110 |
| Protein-coding | LOC_Os09g15420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58380 LOC_Os03g61710 LOC_Os04g51880 LOC_Os07g07550 LOC_Os08g14330 LOC_Os01g34480 LOC_Os06g25439 LOC_Os02g04840 LOC_Os02g57990 LOC_Os02g57180 LOC_Os06g48940 More.. |
| Downstream Genes | LOC_Os09g39410 LOC_Os11g07930 LOC_Os11g07922 LOC_Os10g01044 LOC_Os12g41590 LOC_Os12g43740 LOC_Os11g16410 LOC_Os09g25150 LOC_Os10g06720 LOC_Os09g16090 LOC_Os09g39670 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 osa-miR169r-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn00520 rn01100 rn01110 |
| Metacyc Pathways | PWY-2582 DTDPRHAMSYN-PWY ENTBACSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g15420.1 |
| Rice Genome Annotation | LOC_Os09g15420.1 |
| Ricechip | LOC_Os09g15420.1 |
| KEGG | osa:4346723 dosa:Os09t0323000-01 |
| Entrez-Gene | 4346723 |