RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g19560.1 View Network Show in Genome Browser |
| Other Names | Os09g0359800 |
| Description | methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 11702888-11706372 Nucleotide Length: 921 |
| Protein-coding | LOC_Os09g19560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22350 LOC_Os06g03780 LOC_Os04g53770 LOC_Os08g05880 LOC_Os01g13730 LOC_Os03g51900 LOC_Os08g09350 LOC_Os08g28980 LOC_Os03g61560 LOC_Os03g52470 LOC_Os05g11550 More.. |
| Downstream Genes | LOC_Os11g01420 LOC_Os12g01430 LOC_Os12g04010 LOC_Os11g04200 LOC_Os11g04180 LOC_Os12g03990 LOC_Os12g43830 LOC_Os10g01540 LOC_Os10g10434 LOC_Os11g41890 LOC_Os12g43600 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Reference | |
|---|---|
| PubMed | 21853042 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g19560.1 |
| Rice Genome Annotation | LOC_Os09g19560.1 |
| Ricechip | LOC_Os09g19560.1 |
| KEGG | osa:4346843 dosa:Os09t0359800-01 |
| Entrez-Gene | 4346843 |