RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g19734.4 View Network Show in Genome Browser |
| Other Names | Os09g0361400 |
| Description | isochorismate synthase 1, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 11805716-11815328 Nucleotide Length: 348 |
| Protein-coding | LOC_Os09g19734 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16910 LOC_Os03g20750 LOC_Os08g17680 LOC_Os03g05520 LOC_Os03g03450 LOC_Os07g08430 LOC_Os02g08180 LOC_Os06g49480 LOC_Os01g38510 LOC_Os02g37090 LOC_Os05g36070 More.. |
| Downstream Genes | LOC_Os11g09280 LOC_Os11g38780 LOC_Os09g27830 LOC_Os10g32550 LOC_Os11g37920 LOC_Os10g30860 LOC_Os12g07490 LOC_Os09g20090 LOC_Os10g38950 LOC_Os12g32950 LOC_Os09g31180 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g19734.4 |
| Rice Genome Annotation | LOC_Os09g19734.4 |
| Ricechip | LOC_Os09g19734.4 |
| KEGG | osa:4346851 dosa:Os09t0361400-01 |
| Entrez-Gene | 4346851 |