RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g20440.1 View Network Show in Genome Browser |
| Other Names | Os09g0370300 |
| Description | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 12295771-12298189 Nucleotide Length: 1854 |
| Protein-coding | LOC_Os09g20440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g04240 LOC_Os04g32020 LOC_Os07g49520 LOC_Os02g31040 LOC_Os04g32330 LOC_Os03g56300 LOC_Os07g38970 LOC_Os02g40830 LOC_Os02g13840 LOC_Os03g61960 LOC_Os07g18120 More.. |
| Downstream Genes | LOC_Os11g47330 LOC_Os11g47120 LOC_Os11g34350 LOC_Os09g33950 LOC_Os10g04860 LOC_Os11g33240 LOC_Os12g37870 LOC_Os10g33800 LOC_Os12g43630 |
| Pathways | |
|---|---|
| Metacyc Pathways | P23-PWY P105-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g20440.1 |
| Rice Genome Annotation | LOC_Os09g20440.1 |
| Ricechip | LOC_Os09g20440.1 |
| KEGG | osa:4346890 dosa:Os09t0370300-01 |
| Entrez-Gene | 4346890 |