RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g20530.1 View Network Show in Genome Browser |
| Other Names | |
| Description | thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 12372140-12372661 Nucleotide Length: 522 |
| Protein-coding | LOC_Os09g20530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39570 LOC_Os01g46380 LOC_Os05g49800 LOC_Os02g05780 LOC_Os08g44530 LOC_Os05g24660 LOC_Os03g12890 LOC_Os05g48450 LOC_Os04g47190 LOC_Os05g47840 LOC_Os03g01600 More.. |
| Downstream Genes | LOC_Os11g14950 LOC_Os10g30970 LOC_Os11g41160 LOC_Os12g31820 LOC_Os12g04440 LOC_Os11g04670 LOC_Os10g40200 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g20530.1 |
| Rice Genome Annotation | LOC_Os09g20530.1 |
| Ricechip | LOC_Os09g20530.1 |