RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g20990.1 View Network Show in Genome Browser |
| Other Names | Os09g0376800 |
| Description | trehalose-6-phosphate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 12644225-12650074 Nucleotide Length: 2592 |
| Protein-coding | LOC_Os09g20990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g30160 LOC_Os02g44230 LOC_Os09g20390 LOC_Os08g31630 LOC_Os07g43160 LOC_Os06g11840 LOC_Os04g46760 LOC_Os03g26910 LOC_Os02g51680 LOC_Os05g44100 LOC_Os08g34580 More.. |
| Downstream Genes | LOC_Os10g40550 LOC_Os09g25890 LOC_Os09g23350 LOC_Os12g09060 LOC_Os12g32130 LOC_Os12g24580 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | TRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g20990.1 |
| Rice Genome Annotation | LOC_Os09g20990.1 |
| Ricechip | LOC_Os09g20990.1 |
| KEGG | osa:4346917 dosa:Os09t0376800-01 |
| Entrez-Gene | 4346917 |