RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g21110.1 View Network Show in Genome Browser |
| Other Names | Os09g0378300 |
| Description | leucyl-tRNA synthetase, cytoplasmic, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 12730527-12735642 Nucleotide Length: 3285 |
| Protein-coding | LOC_Os09g21110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g28750 LOC_Os01g19840 LOC_Os05g38520 LOC_Os01g62350 LOC_Os03g10340 LOC_Os06g43760 LOC_Os02g18550 LOC_Os03g48850 LOC_Os01g03020 LOC_Os06g31210 LOC_Os01g63710 More.. |
| Downstream Genes | LOC_Os12g21798 LOC_Os10g26050 LOC_Os10g36210 LOC_Os12g34510 LOC_Os09g38530 LOC_Os10g32920 LOC_Os12g35570 LOC_Os10g35990 LOC_Os12g43830 LOC_Os11g38959 LOC_Os11g37080 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1866-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g21110.1 |
| Rice Genome Annotation | LOC_Os09g21110.1 |
| Ricechip | LOC_Os09g21110.1 |
| KEGG | osa:4346920 dosa:Os09t0378300-01 |
| Entrez-Gene | 4346920 |