RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g22540.1 View Network Show in Genome Browser |
| Other Names | Os09g0393200 |
| Description | transcription factor jumonji, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 13595422-13601889 Nucleotide Length: 1140 |
| Protein-coding | LOC_Os09g22540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g36160 LOC_Os02g13530 LOC_Os01g52490 LOC_Os01g36630 LOC_Os05g10770 LOC_Os01g08820 LOC_Os03g05680 LOC_Os01g67970 LOC_Os05g23670 LOC_Os02g57990 LOC_Os03g63920 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g03900 LOC_Os11g43620 LOC_Os12g18150 LOC_Os11g03570 LOC_Os12g03340 LOC_Os10g35250 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g22540.1 |
| Rice Genome Annotation | LOC_Os09g22540.1 |
| Ricechip | LOC_Os09g22540.1 |
| KEGG | osa:4346966 dosa:Os09t0393200-01 |
| Entrez-Gene | 4346966 |