RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os09g23540.1 View Network Show in Genome Browser
Other Names	Os09g0400000
Description	dehydrogenase, putative, expressed
Gene Attributes	Chromosome: Chr9 CDS Coordinates (5'-3'): 13986804-13988784 Nucleotide Length: 1311
Protein-coding	LOC_Os09g23540

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0008219	cell death	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g01190 LOC_Os04g41960 LOC_Os01g54940 LOC_Os01g66720 LOC_Os08g29170 LOC_Os05g24880 LOC_Os04g30420 LOC_Os03g17660 LOC_Os06g14530 LOC_Os08g40180 LOC_Os06g24540 More..
Downstream Genes	LOC_Os11g01154 LOC_Os12g01160 LOC_Os09g31970 LOC_Os11g16410 LOC_Os12g02120 LOC_Os11g02180 LOC_Os10g05660 LOC_Os09g36560 LOC_Os10g40590 LOC_Os12g04440 LOC_Os11g04670 More..

miRNA Regulations
miRNAs	osa-miR531b osa-miR1848

Pathways
KEGG Pathways	rn00940 rn01100 rn01110
Metacyc Pathways	PWY-361 PWY-6027

Database Links
Gramene	LOC_Os09g23540.1
Rice Genome Annotation	LOC_Os09g23540.1
Ricechip	LOC_Os09g23540.1
KEGG	osa:4346989 dosa:Os09t0400000-00
Entrez-Gene	4346989