RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os09g23560.1 View Network Show in Genome Browser
Other Names	Os09g0400400
Description	dehydrogenase, putative, expressed
Gene Attributes	Chromosome: Chr9 CDS Coordinates (5'-3'): 14001192-14003182 Nucleotide Length: 1089
Protein-coding	LOC_Os09g23560

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0008219	cell death	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os04g41960 LOC_Os07g14070 LOC_Os07g14030 LOC_Os07g03730 LOC_Os02g27300 LOC_Os01g28450 LOC_Os06g37440 LOC_Os02g32490 LOC_Os02g12794 LOC_Os02g12800 LOC_Os03g30830 More..
Downstream Genes	LOC_Os12g01160 LOC_Os11g01154 LOC_Os11g16410 LOC_Os10g05660 LOC_Os09g36560 LOC_Os12g04440 LOC_Os11g04670 LOC_Os10g40590 LOC_Os10g29470 LOC_Os11g41160 LOC_Os12g31820 More..

miRNA Regulations
miRNAs	osa-miR5340

Pathways
KEGG Pathways	rn00521 rn00524 rn01110 rn00520 rn00051 rn00052 rn00010 rn01100 rn01120 rn00500
Metacyc Pathways	P124-PWY PWY-6693 PWY-6531 PWY-842 PWY-621 P122-PWY SUCUTIL-PWY PWY-5384 PWY-3801

Database Links
Gramene	LOC_Os09g23560.1
Rice Genome Annotation	LOC_Os09g23560.1
Ricechip	LOC_Os09g23560.1
KEGG	osa:4346993 dosa:Os09t0400400-01
Entrez-Gene	4346993