RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g23730.1 View Network Show in Genome Browser |
| Other Names | Os09g0402100 |
| Description | HMG-Y-related protein A, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 14106177-14107337 Nucleotide Length: 642 |
| Protein-coding | LOC_Os09g23730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g21580 LOC_Os02g48600 LOC_Os07g27140 LOC_Os08g37270 LOC_Os08g40150 LOC_Os02g57820 LOC_Os02g36710 LOC_Os01g63910 LOC_Os05g45930 |
| Downstream Genes | LOC_Os12g01916 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g23730.1 |
| Rice Genome Annotation | LOC_Os09g23730.1 |
| Ricechip | LOC_Os09g23730.1 |
| KEGG | osa:4347003 dosa:Os09t0402100-01 |
| Entrez-Gene | 4347003 |