RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g24220.1 View Network Show in Genome Browser |
| Other Names | Os09g0407600 |
| Description | MSH-like DNA mismatch repair protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 14378100-14386813 Nucleotide Length: 3831 |
| Protein-coding | LOC_Os09g24220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g19270 LOC_Os02g56130 LOC_Os02g53680 LOC_Os01g67250 LOC_Os06g07210 LOC_Os04g58630 LOC_Os02g37920 LOC_Os05g06840 LOC_Os01g72880 LOC_Os05g46270 LOC_Os05g43610 More.. |
| Downstream Genes | LOC_Os11g03430 LOC_Os12g03130 LOC_Os09g37930 LOC_Os11g07870 LOC_Os10g37490 LOC_Os12g10850 LOC_Os11g19720 LOC_Os11g48090 LOC_Os10g34750 LOC_Os09g26760 LOC_Os11g08330 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g24220.1 |
| Rice Genome Annotation | LOC_Os09g24220.1 |
| Ricechip | LOC_Os09g24220.1 |
| KEGG | osa:4347016 dosa:Os09t0407600-01 |
| Entrez-Gene | 4347016 |