RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g24250.1 View Network Show in Genome Browser |
| Other Names | Os09g0407900 |
| Description | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 14394487-14399474 Nucleotide Length: 1665 |
| Protein-coding | LOC_Os09g24250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08200 LOC_Os05g28980 LOC_Os04g55480 LOC_Os06g50910 LOC_Os07g46660 LOC_Os04g37950 LOC_Os07g06610 LOC_Os01g36930 LOC_Os03g05300 LOC_Os03g22690 LOC_Os03g09080 More.. |
| Downstream Genes | LOC_Os09g28940 LOC_Os09g32740 LOC_Os12g30540 LOC_Os11g36470 LOC_Os12g39210 LOC_Os12g31810 LOC_Os11g39650 LOC_Os12g42600 LOC_Os12g03816 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g24250.1 |
| Rice Genome Annotation | LOC_Os09g24250.1 |
| Ricechip | LOC_Os09g24250.1 |
| KEGG | osa:4347019 dosa:Os09t0407900-01 |
| Entrez-Gene | 4347019 |