RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g25900.1 View Network Show in Genome Browser |
| Other Names | Os09g0428000 |
| Description | CSLC2 - cellulose synthase-like family C, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 15546366-15549203 Nucleotide Length: 2097 |
| Protein-coding | LOC_Os09g25900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g10770 LOC_Os04g52230 LOC_Os01g53240 LOC_Os02g13560 LOC_Os03g59340 LOC_Os06g42020 LOC_Os05g32710 LOC_Os03g52630 LOC_Os07g39280 LOC_Os04g09720 LOC_Os02g10190 More.. |
| Downstream Genes | LOC_Os11g05390 LOC_Os11g27329 LOC_Os11g27264 LOC_Os10g01110 LOC_Os12g37650 LOC_Os09g28620 LOC_Os10g22590 LOC_Os10g35180 LOC_Os09g37020 LOC_Os10g30290 LOC_Os11g42390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR529b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00563 rn01100 |
| Metacyc Pathways | PWY-5338 PWY-2901 PWY-2881 PWY-2902 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g25900.1 |
| Rice Genome Annotation | LOC_Os09g25900.1 |
| Ricechip | LOC_Os09g25900.1 |
| KEGG | osa:4347118 dosa:Os09t0428000-00 |
| Entrez-Gene | 4347118 |