RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g26180.1 View Network Show in Genome Browser |
| Other Names | Os09g0431500 |
| Description | transcription initiation factor TFIID subunit 10, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 15781080-15784885 Nucleotide Length: 498 |
| Protein-coding | LOC_Os09g26180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g44030 LOC_Os01g32750 LOC_Os01g63940 LOC_Os01g23630 LOC_Os03g29470 LOC_Os03g53960 LOC_Os05g28010 LOC_Os01g46020 LOC_Os03g45410 LOC_Os07g22950 LOC_Os09g24440 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os10g28040 LOC_Os09g36440 LOC_Os10g29660 LOC_Os09g35920 LOC_Os10g10990 LOC_Os09g29980 LOC_Os12g37370 LOC_Os10g25770 LOC_Os10g34380 LOC_Os11g28350 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-31 ARG-GLU-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g26180.1 |
| Rice Genome Annotation | LOC_Os09g26180.1 |
| Ricechip | LOC_Os09g26180.1 |
| KEGG | osa:4347127 dosa:Os09t0431500-01 |
| Entrez-Gene | 4347127 |