RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g26380.1 View Network Show in Genome Browser |
| Other Names | Os09g0433900 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 15930510-15936557 Nucleotide Length: 1461 |
| Protein-coding | LOC_Os09g26380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g53450 LOC_Os02g56300 LOC_Os01g70380 LOC_Os03g14800 LOC_Os01g70370 LOC_Os06g35540 LOC_Os01g70360 LOC_Os02g14110 LOC_Os07g05640 LOC_Os05g04870 LOC_Os03g04970 More.. |
| Downstream Genes | LOC_Os10g41150 LOC_Os10g42090 LOC_Os10g11200 LOC_Os11g31640 LOC_Os09g28050 LOC_Os10g32550 LOC_Os09g33500 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 rn00250 rn00710 rn01120 |
| Metacyc Pathways | ETHYL-PWY PWY-4361 ALANINE-SYN2-PWY ALANINE-DEG3-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g26380.1 |
| Rice Genome Annotation | LOC_Os09g26380.1 |
| Ricechip | LOC_Os09g26380.1 |
| KEGG | osa:4347138 dosa:Os09t0433900-01 |
| Entrez-Gene | 4347138 |