RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g27210.1 View Network Show in Genome Browser |
| Other Names | Os09g0444200 |
| Description | lecithine cholesterol acyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 16543046-16549779 Nucleotide Length: 2076 |
| Protein-coding | LOC_Os09g27210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48350 LOC_Os06g22080 LOC_Os02g05870 LOC_Os03g47949 LOC_Os01g72870 LOC_Os03g47780 LOC_Os04g36620 LOC_Os07g10600 LOC_Os03g51670 LOC_Os02g43850 LOC_Os08g39370 More.. |
| Downstream Genes | LOC_Os12g43740 LOC_Os09g31130 LOC_Os09g34860 LOC_Os10g35960 LOC_Os09g34960 LOC_Os12g44150 LOC_Os11g29400 LOC_Os11g08569 LOC_Os12g42876 LOC_Os10g26130 LOC_Os12g42884 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00561 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g27210.1 |
| Rice Genome Annotation | LOC_Os09g27210.1 |
| Ricechip | LOC_Os09g27210.1 |
| KEGG | osa:4347190 dosa:Os09t0444200-01 |
| Entrez-Gene | 4347190 |