RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g27420.2 View Network Show in Genome Browser |
| Other Names | Os09g0446800 |
| Description | formate--tetrahydrofolate ligase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 16654464-16658667 Nucleotide Length: 2112 |
| Protein-coding | LOC_Os09g27420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g45010 LOC_Os04g51630 LOC_Os08g03640 LOC_Os03g38000 LOC_Os01g67134 LOC_Os03g56800 LOC_Os07g10350 LOC_Os08g13690 LOC_Os03g18410 LOC_Os05g38520 LOC_Os01g62350 More.. |
| Downstream Genes | LOC_Os09g39910 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g01510 LOC_Os11g06750 LOC_Os12g07010 LOC_Os12g01520 LOC_Os12g36950 LOC_Os10g10244 LOC_Os09g29190 LOC_Os10g41470 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g27420.2 |
| Rice Genome Annotation | LOC_Os09g27420.2 |
| Ricechip | LOC_Os09g27420.2 |
| KEGG | osa:4347204 dosa:Os09t0446800-01 |
| Entrez-Gene | 4347204 |