RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g27910.1 View Network Show in Genome Browser |
| Other Names | Os09g0452400 |
| Description | aspartic proteinase nepenthesin precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 16970180-16971732 Nucleotide Length: 1326 |
| Protein-coding | LOC_Os09g27910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g09190 LOC_Os08g36530 LOC_Os01g56930 LOC_Os01g12800 LOC_Os05g43570 LOC_Os07g44710 LOC_Os02g07760 LOC_Os07g44430 LOC_Os07g01150 LOC_Os06g46770 LOC_Os05g42424 More.. |
| Downstream Genes | LOC_Os12g12860 LOC_Os11g48020 LOC_Os10g11140 LOC_Os12g19290 LOC_Os10g33640 LOC_Os09g27940 LOC_Os09g30150 LOC_Os12g07590 LOC_Os12g39360 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 osa-miR2907a osa-miR2907b osa-miR2907c osa-miR2907d |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g27910.1 |
| Rice Genome Annotation | LOC_Os09g27910.1 |
| Ricechip | LOC_Os09g27910.1 |
| KEGG | osa:4347231 dosa:Os09t0452400-01 |
| Entrez-Gene | 4347231 |