RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g28354.1 View Network Show in Genome Browser |
| Other Names | Os09g0456800 |
| Description | CPuORF39 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17221426-17228961 Nucleotide Length: 909 |
| Protein-coding | LOC_Os09g28354 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47650 LOC_Os05g51690 LOC_Os01g69920 LOC_Os04g32660 LOC_Os02g32120 LOC_Os02g37000 LOC_Os03g51550 LOC_Os06g06090 LOC_Os03g17700 LOC_Os04g28990 LOC_Os07g38430 More.. |
| Downstream Genes | LOC_Os11g18170 LOC_Os10g21810 LOC_Os11g39670 LOC_Os10g38950 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Reference | |
|---|---|
| PubMed | 21792744 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g28354.1 |
| Rice Genome Annotation | LOC_Os09g28354.1 |
| Ricechip | LOC_Os09g28354.1 |
| KEGG | osa:4347259 dosa:Os09t0456800-01 |
| Entrez-Gene | 4347259 |