RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g28400.1 View Network Show in Genome Browser |
| Other Names | Os09g0457400 |
| Description | alpha-amylase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17288993-17291295 Nucleotide Length: 1323 |
| Protein-coding | LOC_Os09g28400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g41140 LOC_Os02g56850 LOC_Os03g56580 LOC_Os06g26234 LOC_Os02g32660 LOC_Os06g51084 LOC_Os07g11650 LOC_Os09g25050 LOC_Os06g47830 LOC_Os01g41530 LOC_Os04g43310 More.. |
| Downstream Genes | LOC_Os09g39570 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | PWY-842 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g28400.1 |
| Rice Genome Annotation | LOC_Os09g28400.1 |
| Ricechip | LOC_Os09g28400.1 |
| KEGG | osa:4347262 dosa:Os09t0457400-01 |
| Entrez-Gene | 4347262 |