RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g28440.1 View Network Show in Genome Browser |
| Other Names | Os09g0457900 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17306100-17307199 Nucleotide Length: 825 |
| Protein-coding | LOC_Os09g28440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g50420 LOC_Os07g48280 LOC_Os05g31620 LOC_Os01g28790 LOC_Os01g72530 LOC_Os02g08440 LOC_Os03g01740 LOC_Os08g37660 LOC_Os01g38980 LOC_Os04g41960 LOC_Os01g64360 More.. |
| Downstream Genes | LOC_Os09g35010 |
| Reference | |
|---|---|
| PubMed | 21753115 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g28440.1 |
| Rice Genome Annotation | LOC_Os09g28440.1 |
| Ricechip | LOC_Os09g28440.1 |
| KEGG | osa:4347266 dosa:Os09t0457900-01 |
| Entrez-Gene | 4347266 |