RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g28590.3 View Network Show in Genome Browser |
| Other Names | Os09g0460000 |
| Description | AGAP010609-PA, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17393602-17395622 Nucleotide Length: 591 |
| Protein-coding | LOC_Os09g28590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g30480 LOC_Os06g46600 LOC_Os08g09770 LOC_Os03g50250 LOC_Os03g16880 LOC_Os02g02410 LOC_Os05g35400 LOC_Os03g02260 LOC_Os03g60620 LOC_Os05g08840 LOC_Os05g38530 More.. |
| Downstream Genes | LOC_Os12g05760 LOC_Os09g31486 LOC_Os11g08460 LOC_Os11g47760 LOC_Os11g08440 LOC_Os11g08470 LOC_Os12g14070 LOC_Os12g38180 LOC_Os09g39500 LOC_Os11g28350 LOC_Os12g17070 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g28590.3 |
| Rice Genome Annotation | LOC_Os09g28590.3 |
| Ricechip | LOC_Os09g28590.3 |
| KEGG | osa:4347281 dosa:Os09t0460000-01 |
| Entrez-Gene | 4347281 |