RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g28940.1 View Network Show in Genome Browser |
| Other Names | Os09g0464400 |
| Description | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17600530-17608513 Nucleotide Length: 2814 |
| Protein-coding | LOC_Os09g28940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g30980 LOC_Os02g12600 LOC_Os03g25450 LOC_Os08g39140 LOC_Os01g33050 LOC_Os09g24250 LOC_Os02g02360 LOC_Os03g42770 LOC_Os03g27210 LOC_Os01g36930 LOC_Os07g19190 More.. |
| Downstream Genes | LOC_Os12g06910 LOC_Os09g30418 LOC_Os09g30412 LOC_Os10g01540 LOC_Os11g38170 LOC_Os12g16350 LOC_Os11g01420 LOC_Os09g32274 LOC_Os12g29660 LOC_Os12g01430 LOC_Os12g10580 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g28940.1 |
| Rice Genome Annotation | LOC_Os09g28940.1 |
| Ricechip | LOC_Os09g28940.1 |
| KEGG | osa:4347307 dosa:Os09t0464400-00 |
| Entrez-Gene | 4347307 |