RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g29190.2 View Network Show in Genome Browser |
| Other Names | Os09g0467100 |
| Description | phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 17742622-17746505 Nucleotide Length: 1185 |
| Protein-coding | LOC_Os09g29190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g10570 LOC_Os02g57240 LOC_Os08g39160 LOC_Os03g52840 LOC_Os05g18790 LOC_Os01g65260 LOC_Os05g01440 LOC_Os01g66500 LOC_Os06g22560 LOC_Os05g35580 LOC_Os02g38020 More.. |
| Downstream Genes | LOC_Os12g09540 LOC_Os10g25320 LOC_Os12g41180 LOC_Os12g07590 LOC_Os12g34380 LOC_Os10g40200 LOC_Os09g30418 LOC_Os09g30412 LOC_Os12g13320 LOC_Os09g35790 LOC_Os10g13700 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5536 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g29190.2 |
| Rice Genome Annotation | LOC_Os09g29190.2 |
| Ricechip | LOC_Os09g29190.2 |
| KEGG | osa:4347318 dosa:Os09t0467100-01 |
| Entrez-Gene | 4347318 |