RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g29630.1 View Network Show in Genome Browser |
| Other Names | Os09g0471900 |
| Description | NOL1/NOP2/sun family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18013221-18020628 Nucleotide Length: 2643 |
| Protein-coding | LOC_Os09g29630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g50350 LOC_Os01g32130 LOC_Os03g22690 LOC_Os02g04270 LOC_Os07g16950 LOC_Os01g49330 LOC_Os06g30320 LOC_Os07g47420 LOC_Os07g28400 LOC_Os03g58810 LOC_Os09g19560 More.. |
| Downstream Genes | LOC_Os11g34350 LOC_Os09g37860 LOC_Os09g36530 LOC_Os10g34670 LOC_Os12g37590 LOC_Os10g27174 LOC_Os12g30060 LOC_Os10g31520 LOC_Os11g36050 LOC_Os09g32976 LOC_Os09g32810 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2099-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g29630.1 |
| Rice Genome Annotation | LOC_Os09g29630.1 |
| Ricechip | LOC_Os09g29630.1 |
| KEGG | osa:4347343 dosa:Os09t0471900-01 |
| Entrez-Gene | 4347343 |