RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g29930.1 View Network Show in Genome Browser |
| Other Names | Os09g0475400 |
| Description | transcription factor BIM2, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18207613-18215108 Nucleotide Length: 1515 |
| Protein-coding | LOC_Os09g29930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07990 LOC_Os06g09570 LOC_Os07g01920 LOC_Os03g45290 LOC_Os07g38360 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g29930.1 |
| Rice Genome Annotation | LOC_Os09g29930.1 |
| Ricechip | LOC_Os09g29930.1 |
| KEGG | osa:4347359 dosa:Os09t0475400-01 |
| Entrez-Gene | 4347359 |