RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g30100.1 View Network Show in Genome Browser |
| Other Names | Os09g0477900 |
| Description | NOL1/NOP2/sun family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18293017-18300993 Nucleotide Length: 1635 |
| Protein-coding | LOC_Os09g30100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49330 LOC_Os01g45070 LOC_Os03g45400 LOC_Os01g44980 LOC_Os01g26210 LOC_Os01g37510 LOC_Os08g39220 LOC_Os03g07300 LOC_Os04g03830 LOC_Os03g62430 LOC_Os02g42160 More.. |
| Downstream Genes | LOC_Os09g32810 LOC_Os09g30454 LOC_Os09g38834 LOC_Os09g38840 LOC_Os11g47150 LOC_Os09g38850 LOC_Os09g37890 LOC_Os12g33100 LOC_Os11g35274 LOC_Os12g37980 LOC_Os11g47110 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g30100.1 |
| Rice Genome Annotation | LOC_Os09g30100.1 |
| Ricechip | LOC_Os09g30100.1 |
| KEGG | osa:4347368 dosa:Os09t0477900-01 |
| Entrez-Gene | 4347368 |