RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g30160.1 View Network Show in Genome Browser |
| Other Names | Os09g0478600 |
| Description | zinc finger, C3HC4 type domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18351687-18352651 Nucleotide Length: 498 |
| Protein-coding | LOC_Os09g30160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g27030 LOC_Os04g58620 LOC_Os09g25090 LOC_Os02g28720 |
| Downstream Genes | LOC_Os10g35670 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g30160.1 |
| Rice Genome Annotation | LOC_Os09g30160.1 |
| Ricechip | LOC_Os09g30160.1 |
| KEGG | osa:4347374 dosa:Os09t0478600-01 |
| Entrez-Gene | 4347374 |